Repositories list

• upptime

  Public
  📈 Uptime monitor and status page for OME, powered by @upptime

  uptime-monitorstatus-pageupptime

  uptime-monitorstatus-pageupptime

  Markdown

  •

  MIT License

  •11 fork•11 star•11 issue•11 pull request•Updated May 18, 2026May 18, 2026

• status

  Public
  Status dashboard for the OME project

  statusdashboardgh-pages+ 1

  statusdashboardgh-pagesome

  HTML

  •55 forks•11 star•66 issues•11 pull request•Updated May 17, 2026May 17, 2026

• openmicroscopy

  Public
  OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. …

  pythonjavaimage+ 3

  pythonjavaimagedatabaseserveromero

  Java

  •

  GNU General Public License v2.0

  •104104 forks•218218 stars•2323 issues•44 pull requests•Updated May 17, 2026May 17, 2026

• omero-documentation

  Public
  Sphinx-based documentation for the Open Microscopy Environment

  documentationomeroome

  documentationomeroome

  Python

  •

  BSD 2-Clause "Simplified" License

  •5252 forks•2424 stars•2222 issues•33 pull requests•Updated May 17, 2026May 17, 2026

• omero-gateway-java

  Public
  Gradle project containing OMERO Java Client Library

  javaapibuild+ 5

  javaapibuildsdkcomponentgradlejaromero

  Java

  •

  GNU General Public License v2.0

  •1010 forks•11 star•1515 issues•22 pull requests•Updated May 15, 2026May 15, 2026

• omero_search_engine

  Public
  App which is used to search metadata (key-value pairs)

  Python

  •

  GNU General Public License v2.0

  •55 forks•33 stars•1515 issues•44 pull requests•Updated May 14, 2026May 14, 2026

• omero-zarr-pixel-buffer

  Public
  OMERO Zarr Pixel Buffer Implementation

  Java

  •

  GNU General Public License v2.0

  •1010 forks•00 stars•00 issues•11 pull request•Updated May 14, 2026May 14, 2026

• omero-build

  Public
  OMERO top-level build for all components

  buildomerometa-repo

  buildomerometa-repo

  Dockerfile

  •77 forks•11 star•33 issues•22 pull requests•Updated May 14, 2026May 14, 2026

• ome-poi

  Public
  OME fork of Apache Jakarta POI

  poi

  poi

  Java

  •

  Apache License 2.0

  •55 forks•00 stars•22 issues•11 pull request•Updated May 13, 2026May 13, 2026

• ome-metakit

  Public
  Library for reading Metakit database files

  metakit

  metakit

  Java

  •

  GNU General Public License v2.0

  •77 forks•33 stars•00 issues•22 pull requests•Updated May 13, 2026May 13, 2026

• bio-formats-documentation

  Public
  Bio-Formats documentation

  documentationbio-formats

  documentationbio-formats

  Java

  •

  BSD 2-Clause "Simplified" License

  •1919 forks•99 stars•55 issues•00 pull requests•Updated May 13, 2026May 13, 2026

• ome-zarr-py

  Public
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  omezarrngff+ 1

  omezarrngffome-zarr

  Python

  •

  Other

  •6868 forks•239239 stars•6060 issues•88 pull requests•Updated May 13, 2026May 13, 2026

• ngff

  Public
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  data-sciencecloudspec+ 2

  data-sciencecloudspecbioimagingfile-formats

  Python

  •

  Other

  •6767 forks•159159 stars•117117 issues•88 pull requests•Updated May 13, 2026May 13, 2026

• omero-figure

  Public
  An OMERO.web app for creating Figures from images in OMERO

  webappomero

  webappomero

  JavaScript

  •

  GNU Affero General Public License v3.0

  •3838 forks•2121 stars•6262 issues•44 pull requests•Updated May 12, 2026May 12, 2026

• omero-demo-cleanup

  Public
  A CLI plugin for managing the disk space on the OME demo server

  Python

  •

  GNU General Public License v2.0

  •44 forks•22 stars•00 issues•11 pull request•Updated May 11, 2026May 11, 2026

• ome_zarr_test_suite

  Public
  Test suite of reader and writer implementations

  Python

  •77 forks•55 stars•33 issues•33 pull requests•Updated May 11, 2026May 11, 2026

• napari-ome-zarr

  Public
  A napari plugin for zarr backed OME-NGFF images

  pythonnapari-pluginzarr+ 1

  pythonnapari-pluginzarrngff

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2626 forks•5050 stars•3030 issues•66 pull requests•Updated May 11, 2026May 11, 2026

• ome2024-ngff-challenge

  Public
  Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data

  ome-ngffome-zarr-converter

  ome-ngffome-zarr-converter

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2020 forks•2121 stars•1111 issues•33 pull requests•Updated May 11, 2026May 11, 2026

• omero-iviewer

  Public
  An OMERO.web app allowing to view images

  webappomero

  webappomero

  JavaScript

  •

  Other

  •3636 forks•2020 stars•6161 issues•1111 pull requests•Updated May 9, 2026May 9, 2026

• omero-blitz

  Public
  Gradle project containing Ice remoting code for OMERO

  componentserverjar+ 2

  componentserverjarlibomero

  Java

  •

  GNU General Public License v2.0

  •1515 forks•00 stars•3131 issues•11 pull request•Updated May 7, 2026May 7, 2026

• omero-biofilefinder

  Public
  OMERO.web plugin for opening data in BioFile Finder

  Python

  •

  GNU Affero General Public License v3.0

  •33 forks•33 stars•00 issues•22 pull requests•Updated May 7, 2026May 7, 2026

• ansible-role-omero-web

  Public
  Installs and configures OMERO.web and Nginx

  ansibleomeroome+ 1

  ansibleomeroomeopenmicroscopy

  Python

  •

  BSD 2-Clause "Simplified" License

  •1515 forks•22 stars•33 issues•11 pull request•Updated May 7, 2026May 7, 2026

• ansible-role-omero-server

  Public
  Installs and configures OMERO.server

  ansibleserverrole+ 1

  ansibleserverroleomero

  Python

  •

  BSD 2-Clause "Simplified" License

  •1414 forks•55 stars•77 issues•44 pull requests•Updated May 7, 2026May 7, 2026

• ome-ngff-validator

  Public
  Web page for validating OME-NGFF files

  ome-zarr

  ome-zarr

  Svelte

  •

  BSD 2-Clause "Simplified" License

  •99 forks•1111 stars•1313 issues•66 pull requests•Updated May 6, 2026May 6, 2026

• omero-server

  Public
  Gradle project containing main server logic for OMERO

  componentserverjar+ 2

  componentserverjarlibomero

  Java

  •

  GNU General Public License v2.0

  •1616 forks•88 stars•3636 issues•22 pull requests•Updated May 5, 2026May 5, 2026

• www.openmicroscopy.org

  Public
  OME main website

  jekyll-siteome

  jekyll-siteome

  HTML

  •

  Creative Commons Attribution 4.0 International

  •2727 forks•66 stars•1515 issues•00 pull requests•Updated May 5, 2026May 5, 2026

• napari-omero

  Public
  Browse your OMERO database from within napari.

  omeronapari-pluginnapari

  omeronapari-pluginnapari

  Python

  •

  GNU General Public License v2.0

  •1616 forks•4040 stars•1616 issues•55 pull requests•Updated May 1, 2026May 1, 2026

• ngff-spec

  Public
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  Python

  •1010 forks•1313 stars•88 issues•55 pull requests•Updated Apr 28, 2026Apr 28, 2026

• bioimage-latency-benchmark

  Public
  Jupyter Notebook

  •

  Other

  •1010 forks•99 stars•66 issues•44 pull requests•Updated Apr 27, 2026Apr 27, 2026

• omero-cli-zarr

  Public
  omerozarrngff+ 1

  omerozarrngffome-zarr-converter

  Python

  •

  GNU General Public License v2.0

  •1111 forks•2020 stars•2323 issues•1212 pull requests•Updated Apr 27, 2026Apr 27, 2026